Package: tailor 0.1.1

András Asbóth

tailor: Tool for Adapter-domain Identification and Linking Of RBPs

Bacteriophages (phages) are viruses that infect bacteria. Many phages encode receptor binding proteins (RBPs) that mediate attachment to their bacterial hosts. Most RBPs contain a conserved N-terminal domain (we refer to this as an "adapter") which anchors the protein to the phage particle. This package provides functions to indentify these adapters and group them based on sequence similarity.

Authors:András Asbóth [aut, cre], Tamás Stirling [aut]

tailor_0.1.1.tar.gz
tailor_0.1.1.zip(r-4.7-any)tailor_0.1.1.zip(r-4.6-any)tailor_0.1.1.zip(r-4.5-any)
tailor_0.1.1.tgz(r-4.6-any)tailor_0.1.1.tgz(r-4.5-any)
tailor_0.1.1.tar.gz(r-4.7-any)tailor_0.1.1.tar.gz(r-4.6-any)
tailor_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
tailor/json (API)

# Install 'tailor' in R:
install.packages('tailor', repos = c('https://stitam.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sbthandras/tailor/issues

Datasets:

On CRAN:

Conda:

6.93 score 3 stars 51 packages 42 scripts 22k downloads 11 exports 54 dependencies

Last updated from:93f99d3534. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK196
source / vignettesOK197
linux-releaseOK195
macos-releaseOK130
macos-oldrelOK137
windows-develOK154
windows-releaseOK135
windows-oldrelOK138
wasm-releaseOK139

Exports:adapter_matrixcluster_adapterscompletenessfilter_comparisonsfind_adapterfind_all_adaptersfind_breakpointshomogeneityposition_scoresschocovalidate_rbps

Dependencies:BiocGenericsBiostringsbreakpointclicodetoolscpp11crayondoParalleldplyrexpmfarverforeachgenericsggplot2gluegtableIRangesisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmsmmvtnormpatchworkpillarpkgconfigplyrpurrrpwalignqccR6RColorBrewerRcppreshape2rlangS4VectorsS7scalesSeqinfostringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithrXVector