Package: tailor 0.1.1

András Asbóth

tailor: Tool for Adapter-domain Identification and Linking Of RBPs

Bacteriophages (phages) are viruses that infect bacteria. Many phages encode receptor binding proteins (RBPs) that mediate attachment to their bacterial hosts. Most RBPs contain a conserved N-terminal domain (we refer to this as an "adapter") which anchors the protein to the phage particle. This package provides functions to indentify these adapters and group them based on sequence similarity.

Authors:András Asbóth [aut, cre], Tamás Stirling [aut]

tailor_0.1.1.tar.gz
tailor_0.1.1.zip(r-4.7)tailor_0.1.1.zip(r-4.6)tailor_0.1.1.zip(r-4.5)
tailor_0.1.1.tgz(r-4.6-any)tailor_0.1.1.tgz(r-4.5-any)
tailor_0.1.1.tar.gz(r-4.7-any)tailor_0.1.1.tar.gz(r-4.6-any)
tailor_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tailor/json (API)

# Install 'tailor' in R:
install.packages('tailor', repos = c('https://stitam.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sbthandras/tailor/issues

Datasets:

On CRAN:

Conda:

6.79 score 3 stars 51 packages 32 scripts 28k downloads 11 exports 54 dependencies

Last updated from:3929b27e63. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE194
source / vignettesOK181
linux-release-x86_64NOTE198
macos-release-arm64NOTE137
macos-oldrel-arm64NOTE146
windows-develNOTE164
windows-releaseNOTE143
windows-oldrelNOTE130
wasm-releaseOK116

Exports:adapter_matrixcluster_adapterscompletenessfilter_comparisonsfind_adapterfind_all_adaptersfind_breakpointshomogeneityposition_scoresschocovalidate_rbps

Dependencies:BiocGenericsBiostringsbreakpointclicodetoolscpp11crayondoParalleldplyrexpmfarverforeachgenericsggplot2gluegtableIRangesisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmsmmvtnormpatchworkpillarpkgconfigplyrpurrrpwalignqccR6RColorBrewerRcppreshape2rlangS4VectorsS7scalesSeqinfostringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithrXVector