Package: webseq 0.1

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)webseq_0.1.zip(r-4.3)
webseq_0.1.tgz(r-4.4-any)webseq_0.1.tgz(r-4.3-any)
webseq_0.1.tar.gz(r-4.5-noble)webseq_0.1.tar.gz(r-4.4-noble)
webseq_0.1.tgz(r-4.4-emscripten)webseq_0.1.tgz(r-4.3-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://stitam.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

4.35 score 3 stars 1 scripts 20 exports 31 dependencies

Last updated 23 days agofrom:104010da3c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:ena_download_readsena_queryena2ncbiextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_get_summaryncbi_get_uidncbi_linkncbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtncbi_recover_idncbi2enaparse_report

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6rentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2023-12-10
Started: 2023-08-23